Ashley Shade: search on Z-Library

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1

Macroecology to Unite All Life, Large and Small

Shade, Ashley, Dunn, Robert R., Blowes, Shane A., Keil, Petr, Bohannan, Brendan J.M., Herrmann, Martina, Küsel, Kirsten, Lennon, Jay T., Sanders, Nathan J., Storch, David, Chase, Jonathan

Journal:

Trends in Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 2.32 MB

english, 2018

2

A global survey of arsenic-related genes in soil microbiomes

Dunivin, Taylor K., Yeh, Susanna Y., Shade, Ashley

Journal:

Year:

2019

Language:

english

File:

PDF, 12.28 MB

english, 2019

3

The microbial ecology of flowers: an emerging frontier in phyllosphere research 1

Aleklett, Kristin, Hart, Miranda, Shade, Ashley

Journal:

Year:

2014

Language:

english

File:

PDF, 954 KB

english, 2014

4

Dormancy dynamics and dispersal contribute to soil microbiome resilience

Sorensen, Jackson W., Shade, Ashley

Journal:

Philosophical Transactions Biological Sciences

Year:

2020

File:

PDF, 1005 KB

2020

5

Ecological patterns of seed microbiome diversity, transmission, and assembly

Shade, Ashley, Jacques, Marie-Agnès, Barret, Matthieu

Journal:

Current Opinion in Microbiology

Year:

2017

Language:

english

File:

PDF, 443 KB

english, 2017

6

Broadening Participation in Scientific Conferences during the Era of Social Distancing

Fulcher, Michael R., Bolton, Marian L., Millican, Michael D., Michalska-Smith, Matthew J., Dundore-Arias, JosÃ© Pablo, Handelsman, Jo, Klassen, Jonathan L., Milligan-Myhre, Kathryn C., Shade, Ashley,

Journal:

Trends in Microbiology

Year:

2020

File:

PDF, 1.09 MB

2020

7

A town on fire! Integrating 16S rRNA gene amplicon analyses into an undergraduate microbiology lecture class

Tobin, Tammy C, Shade, Ashley

Journal:

FEMS Microbiology Letters

Year:

2018

Language:

english

File:

PDF, 932 KB

english, 2018

8

Trait-based patterns of microbial dynamics in dormancy potential and heterotrophic strategy: case studies of resource-based and post-press succession

Kearns, Patrick J., Shade, Ashley

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 751 KB

english, 2018

9

Fundamentals of Microbial Community Resistance and Resilience

Shade, Ashley, Peter, Hannes, Allison, Steven D., Baho, Didier L., Berga, Mercè, Bürgmann, Helmut, Huber, David H., Langenheder, Silke, Lennon, Jay T., Martiny, Jennifer B. H., Matulich, Kristin L., S

Journal:

Frontiers in Microbiology

Year:

2012

Language:

english

File:

PDF, 2.02 MB

english, 2012

10

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

Jiao, Shuo, Xu, Yiqin, Zhang, Jie, Hao, Xin, Lu, Yahai, Shade, Ashley

Journal:

Year:

2019

Language:

english

File:

PDF, 4.64 MB

english, 2019

11

Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria

Bowsher, Alan W, Benucci, Gian Maria NiccolÃ², Bonito, Gregory, Shade, Ashley

Journal:

Year:

2020

File:

PDF, 2.18 MB

2020

12

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

Grady, Keara L., Sorensen, Jackson W., Stopnisek, Nejc, Guittar, John, Shade, Ashley

Journal:

Nature Communications

Year:

2019

File:

PDF, 1.20 MB

2019

13

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

Grady, Keara L., Sorensen, Jackson W., Stopnisek, Nejc, Guittar, John, Shade, Ashley

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.20 MB

english, 2019

14

Typhoons initiate predictable change in aquatic bacterial communities

Jones, Stuart E., Chiu, Chih-Yu, Kratz, Timothy K., Wu, Jiunn-Tzong, Shade, Ashley, McMahon, Katherine D.

Journal:

Limnology and Oceanography

Year:

2008

Language:

english

File:

PDF, 547 KB

english, 2008

15

Strategies for Building Computing Skills To Support Microbiome Analysis: a Five-Year Perspective from the EDAMAME Workshop

Shade, Ashley, Dunivin, Taylor K., Choi, Jinlyung, Teal, Tracy K., Howe, Adina C., Greene, Casey S.

Journal:

Year:

2019

File:

PDF, 434 KB

2019

16

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

Ashley Shade, Stuart E. Jones, Katherine D. McMahon

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 277 KB

english, 2008

17

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

Ashley Shade, Jordan S. Read, David G. Welkie, Timothy K. Kratz, Chin H. Wu, Katherine D. McMahon

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 696 KB

english, 2011

18

Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies

Shade, Ashley, Carey, Cayelan C, Kara, Emily, Bertilsson, Stefan, McMahon, Katherine D, Smith, Matthew C

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 192 KB

english, 2009

19

Typhoons Initiate Predictable Change in Aquatic Bacterial Communities

Stuart E. Jones, Chih-Yu Chiu, Timothy K. Kratz, Jiunn-Tzong Wu, Ashley Shade and Katherine D. McMahon

Journal:

Limnology and Oceanography

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

20

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

Vital, Marius, Karch, André, Pieper, Dietmar H., Shade, Ashley

Journal:

Year:

2017

Language:

english

File:

PDF, 2.96 MB

english, 2017

21

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire

Lee, Sang-Hoon, Sorensen, Jackson W, Grady, Keara L, Tobin, Tammy C, Shade, Ashley

Journal:

The ISME Journal

Year:

2017

Language:

english

File:

PDF, 454 KB

english, 2017

22

Interannual dynamics and phenology of bacterial communities in a eutrophic lake

Shade, Ashley, Kent, Angela D., Jones, Stuart E., Newton, Ryan J., Triplett, Eric W., McMahon, Katherine D.

Journal:

Limnology and Oceanography

Year:

2007

Language:

english

File:

PDF, 404 KB

english, 2007

23

Controls on soil microbial community stability under climate change

de Vries, Franciska T., Shade, Ashley

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.89 MB

english, 2013

24

Ecological selection for small microbial genomes along a temperate-to-thermal soil gradient

Sorensen, Jackson W., Dunivin, Taylor K., Tobin, Tammy C., Shade, Ashley

Journal:

Nature Microbiology

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

25

No Evidence of Increased Chronic Traumatic Encephalopathy Pathology or Neurodegenerative Proteinopathy in Former Military Service Members: A Preliminary Study

Tripathy, Arushi, Shade, Ashley, Erskine, Brittany, Bailey, Kristi, Grande, Abigail, deJong, Joyce J., Perry, George, Castellani, Rudy J., Tabaton, Massimo

Journal:

Journal of Alzheimer's Disease

Year:

2019

Language:

english

File:

PDF, 1.09 MB

english, 2019

26

Divergence between strength indicators in packaging and cigarette engineering: a case study of Marlboro varieties in Australia and the USA

Bill King, Ron Borland, Shadeed Abdul-Salaam, Gregory Polzin, David Ashley, Clifford Watson and Richard J O'Connor

Journal:

Tobacco Control

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

27

Fungal infection alters the selection, dispersal and drift processes structuring the amphibian skin microbiome

Wilber, Mark Q., Jani, Andrea J., Mihaljevic, Joseph R., Briggs, Cheryl J., Shade, Ashley

Journal:

Ecology Letters

Year:

2019

File:

PDF, 1.80 MB

2019

28

Seasonal and Episodic Lake Mixing Stimulate Differential Planktonic Bacterial Dynamics

Ashley Shade, Chih-Yu Chiu and Katherine D. McMahon

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 1.69 MB

english, 2010

29

When, where and how does microbial community composition matter?

Nemergut, Diana R., Shade, Ashley, Violle, Cyrille

Journal:

Frontiers in Microbiology

Year:

2014

Language:

english

File:

PDF, 402 KB

english, 2014

30

Influence of Feeding Type and Nosema ceranae Infection on the Gut Microbiota of Apis cerana Workers

Huang, Shao K., Ye, Kun T., Huang, Wei F., Ying, Bi H., Su, Xin, Lin, Li H., Li, Jiang H., Chen, Yan P., Li, Ji L., Bao, Xiu L., Hu, Jian Z., Shade, Ashley

Journal:

Year:

2018

Language:

english

File:

PDF, 2.10 MB

english, 2018

31

16S rRNA/rRNA Gene Ratios and Cell Activity Staining Reveal Consistent Patterns of Microbial Activity in Plant-Associated Soil

Bowsher, Alan W., Kearns, Patrick J., Shade, Ashley, Deveau, Aurélie

Journal:

Year:

2019

Language:

english

File:

PDF, 1.47 MB

english, 2019

32

NITROGEN CHANGES AND DOMAIN BACTERIA RIBOTYPE DIVERSITY IN SOILS OVERLYING THE CENTRALIA, PENNSYLVANIA UNDERGROUND COAL MINE FIRE

Tobin-Janzen, Tammy, Shade, Ashley, Marshall, Leslie, Torres, Kristina, Beblo, Curtina, Janzen, Christopher, Lenig, Jennie, Martinez, Amy, Ressler, Daniel

Journal:

Year:

2005

Language:

english

File:

PDF, 288 KB

english, 2005

33

Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives

Chu, Haiyan, Gao, Gui-Feng, Ma, Yuying, Fan, Kunkun, Delgado-Baquerizo, Manuel, Shade, Ashley

Journal:

Year:

2020

File:

PDF, 1.82 MB

2020

34

Assembly of seed-associated microbial communities within and across successive plant generations

Rezki, Samir, Campion, Claire, Simoneau, Philippe, Jacques, Marie-Agnès, Shade, Ashley, Barret, Matthieu

Journal:

Year:

2017

Language:

english

File:

PDF, 835 KB

english, 2017

35

Culturing captures members of the soil rare biosphere

Ashley Shade, Clifford S. Hogan, Amy K. Klimowicz, Matthew Linske, Patricia S. McManus, Jo Handelsman

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 234 KB

english, 2012

36

Erratum for Linz et al., “Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes”

Linz, Alexandra M., Crary, Benjamin C., Shade, Ashley, Owens, Sarah, Gilbert, Jack A., Knight, Rob, McMahon, Katherine D.

Journal:

Year:

2017

Language:

english

File:

PDF, 131 KB

english, 2017

37

Our microbial selves: what ecology can teach us

Gonzalez, Antonio, Clemente, Jose C, Shade, Ashley, Metcalf, Jessica L, Song, Sejin, Prithiviraj, Bharath, Palmer, Brent E, Knight, Rob

Journal:

Year:

2011

Language:

english

File:

PDF, 489 KB

english, 2011

38

Corrigendum: Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau

Zhang, Kaoping, Shi, Yu, Jing, Xin, He, Jin-Sheng, Sun, Ruibo, Yang, Yunfeng, Shade, Ashley, Chu, Haiyan

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 125 KB

english, 2017

39

Beyond the Venn diagram: the hunt for a core microbiome

Ashley Shade, Jo Handelsman

Journal:

Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 180 KB

english, 2012

40

Temporal dynamics of bacterial communities during seed development and maturation

Chesneau, Guillaume, Torres-Cortes, Gloria, Briand, Martial, Darrasse, Armelle, Preveaux, Anne, Marais, Coralie, Jacques, Marie-AgnÃ¨s, Shade, Ashley, Barret, Matthieu

Journal:

FEMS Microbiology Ecology

Year:

2020

File:

PDF, 2.72 MB

2020

41

Interannual Dynamics and Phenology of Bacterial Communities in a Eutrophic Lake

Ashley Shade, Angela D. Kent, Stuart E. Jones, Ryan J. Newton, Eric W. Triplett and Katherine D. McMahon

Journal:

Limnology and Oceanography

Year:

2007

Language:

english

File:

PDF, 1.22 MB

english, 2007

42

Temporal patterns of rarity provide a more complete view of microbial diversity

Shade, Ashley, Gilbert, Jack A.

Journal:

Trends in Microbiology

Year:

2015

Language:

english

File:

PDF, 442 KB

english, 2015

43

Seasonal and Episodic Lake Mixing Stimulate Differential Planktonic Bacterial Dynamics

Ashley Shade, Chih-Yu Chiu, Katherine D. McMahon

Journal:

Microbial Ecology

Year:

2010

Language:

english

File:

PDF, 254 KB

english, 2010

44

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes

Linz, Alexandra M., Crary, Benjamin C., Shade, Ashley, Owens, Sarah, Gilbert, Jack A., Knight, Rob, McMahon, Katherine D., LaPara, Timothy M.

Journal:

Year:

2017

Language:

english

File:

PDF, 640 KB

english, 2017

45

Computing Workflows for Biologists: A Roadmap

Shade, Ashley, Teal, Tracy K.

Journal:

Year:

2015

Language:

english

File:

PDF, 1021 KB

english, 2015

46

A Complex Interplay between Nitric Oxide, Quorum Sensing, and the Unique Secondary Metabolite Tundrenone Constitutes the Hypoxia Response in Methylobacter

Yu, Zheng, Pesesky, Mitchell, Zhang, Lei, Huang, Jing, Winkler, Mari, Chistoserdova, Ludmila, Shade, Ashley

Journal:

Year:

2020

File:

PDF, 6.78 MB

2020

47

Characterizing microbial communities through space and time

Antonio Gonzalez, Andrew King, Michael S Robeson II, Sejin Song, Ashley Shade, Jessica L. Metcalf, Rob Knight

Journal:

Current Opinion in Biotechnology

Year:

2012

Language:

english

File:

PDF, 381 KB

english, 2012

48

Lake microbial communities are resilient after a whole-ecosystem disturbance

Shade, Ashley, Read, Jordan S, Youngblut, Nicholas D, Fierer, Noah, Knight, Rob, Kratz, Timothy K, Lottig, Noah R, Roden, Eric E, Stanley, Emily H, Stombaugh, Jesse, Whitaker, Rachel J, Wu, Chin H, Mc

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

49

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem

Gibbons, Sean M., Lekberg, Ylva, Mummey, Daniel L., Sangwan, Naseer, Ramsey, Philip W., Gilbert, Jack A., Shade, Ashley

Journal:

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

50

The under-ice microbiome of seasonally frozen lakes

Bertilsson, Stefan, Burgin, Amy, Carey, Cayelan C., Fey, Samuel B., Grossart, Hans-Peter, Grubisic, Lorena M., Jones, Ian D., Kirillin, Georgiy, Lennon, Jay T., Shade, Ashley, Smyth, Robyn L.

Journal:

Limnology and Oceanography

Year:

2013

Language:

english

File:

PDF, 920 KB

english, 2013

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